The Challenge

The client works with large single‑cell RNA‑sequencing datasets that require advanced processing, scalable infrastructure and intuitive exploration tools. They wanted a central system for processing, analysing and visualising these data.

Our Approach

We assessed the client’s infrastructure, built a custom Nextflow pipeline and visualisation toolkit, and established long‑term support for evolving omics needs.

• Assessment & design: Reviewed existing infrastructure and designed a scalable cloud environment with a customised visualisation platform.
• Pipeline development & expansion: Built a Nextflow pipeline centralising single‑cell analysis and expanded the platform to handle multi‑ome data, new plots and downloads.
• Long‑term support: Established an ongoing partnership to maintain and enhance the pipeline and toolkit as projects evolve.

The Outcome

• Delivered a centralised analytics and visualisation solution for single‑cell data.
• Enhanced the system to handle 10x multiome data and added new visualisations and download features.
• Established an ongoing collaboration ensuring the platform adapts to new projects and datasets.

Why It Matters

Custom pipelines and visualisation tools transform complex single‑cell datasets into actionable insights. A scalable, user‑friendly platform enables scientists to analyse data efficiently while preparing for future omics technologies.