Custom pipeline for metagenomics & metabolomics data
The Challenge The client needed a complete software suite for automated analysis and visualisation of metagenomic and metabolomic data. Existing workflows involved multiple tools and manual data transfers, limiting efficiency. Our Approach We standardised and...
Characterising inflammation using spatial transcriptomics
The Challenge The client wanted to use spatial single‑cell transcriptomics to study the molecular histopathology of chronic inflammatory bowel disease. No benchmarked workflows existed, and the technology required sophisticated analysis. Our Approach We re‑annotated...
Inferring causality of the microbiome in gastric ulceration
The Challenge The faculty sought to understand how feed size and gastric microbiota contribute to ulcer development in pigs. Identifying causal relationships required advanced biostatistics and careful handling of complex microbiome data. Our Approach We built causal...